Plant MITE

SE3820437

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8755
Solanum tuberosum
SE3820437
Mutator
M11
chr12:60862574-60862899
AAAAAAATA
GGGA

Secondary structure and sequence

TSD TIR

5'

3'

AAAAAAATA    AAAT            C                                           G            C          CC                            T G            CCAAATAT    CAC  G  T  AT
         GGGA    GTACAAGTACCC CCTAGACTATGATCAAAATCCCAGAGACACACCTTAACTAAAC AAGGTCCTATTA CCCCTTGAAC  ATTTTTTTTGTAATTTTGTGCACCTTTT G CTTACGTGGCAT        CTCC   GC CC CA  
         ||||    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||| | ||||||||||||        ||||   || || ||   
         CCCT    CGTGTTCATGGG GGATCTGATACTGGTTTTAGGGTCTCTGTGTGGAATTGATTTG TTCCAGGATAAT GGGGGACTTG  TAAAAAAAACATTAAAACATGTGGAAAA C GAATGCACCGTG        GAGG   TG GG GT  
ATAAAAAAA    AATC            A                                           A            A          AA                            - A            -------T    CAC  A  T  AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820437

AAAAAAATAGGGAAAATGTACAAGTACCCCCCTAGACTATGATCAAAATCCCAGAGACACACCTTAACTAAACGAAGGTCCTATTACCCCCTTGAACCCATTTTTTTTGTAATTTTGTGCACCTTTTTGGCTTACGTGGCATCCAAATATCTCCCACGCGCCTCAATTATGTGGAGTCACGGAGTGTGCCACGTAAGACAAAAGGTGTACAAAATTACAAAAAAAATAAGTTCAGGGGGATAATAGGACCTTAGTTTAGTTAAGGTGTGTCTCTGGGATTTTGGTCATAGTCTAGGAGGGTACTTGTGCCTAATCCCAAAAAAATA

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