SE3830439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8757
  • Solanum tuberosum
  • SE3830439
  • hAT
  • Hat54
  • chr09:51729158-51729361
  • AGCCTCCG
  • CAGTGGCGGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
AGCCTCCG          -  --TAT     CACTTAC    AATTAAGCACCCACTACCTTTTGTGTCAACATTCTTATTTATGTACAAAATTTAGAAATGTATTG
        CAGTGGCGGA CC     GTAGT       GGGT                                                                 
        |||||||||| ||     |||||       ||||                                                                  
        GTCACTGCCT GG     AAAAC       ATAG                                                                 
GCCTCCGA          A  TCTTT     -------    TACCCACGAGTTGATAAAAATCGACCCTTTTACGATGTATATTACCCACGAGTCAATTATATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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