SE3830445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8763
  • Solanum tuberosum
  • SE3830445
  • hAT
  • Hat3
  • chr05:54943274-54943478
  • TATATAAT
  • TATATAATCAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
        AT              GGATTTT    A   -    TCAAAA  --  AAAAAATAGACACACGAAGTAGCCGAAGGGGGGTCGACATCTACTATATATACC
  TATATA  CAGTGGCGGAGCCA       CAAT AGG GGGT      TC  TA                                                      
  ||||||  ||||||||||||||       |||| ||| ||||      ||  ||                                                       
  ATATAT  GTCACCGCCTCGGT       GTTA TCC CCCA      GT  GC                                                      
TA      --              --GGAAT    C   A    ------  AG  TGGGGGGAAGCCGCTTTTTAATATACTAAATATGTGCCAATTTTATTAAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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