SE3820446

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8764
  • Solanum tuberosum
  • SE3820446
  • Mutator
  • M2
  • chr04:60860976-60861382
  • TAGTTTTAA
  • AGGGCAAATTACAGAAATCACATACTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TAGTTTTA    C      C       A   A      -AGGTAAA     A   TA     TAA      -    -TTATA       A                 A                              G   A                  T  T                      ---------        ACA  TA
        AGGG AAATTA AGAAATC CAT CTTTTA        ATTAC ATT  TCCCT   AAGTTT ATAA      GAAATCC TCATTTTCGCGCATCAG TTAGTGTATCAGCGCTTATATTATTGTATC CGC CATCAGATTAATGTATCA CG CTTATATTATTGTATCTCGCGC         ATGTATCA   CT  
        |||| |||||| ||||||| ||| ||||||        ||||| |||  |||||   |||||| ||||      ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||         ||||||||   ||  T
        TCCT TTTAAT TCTTTAG GTG GAAAAT        TAATG TAA  AGGGA   TTCAAA TATT      TTTTAGG AGTAAAAGCGCGTAGTC AATTACATAGTCGCGAATATAATAACATAG GCG GTAGTCTAATTACATAGT GC GAATATAATAATATAGAGTGTG         TACATAGT   GA  
AATTTTGA    T      A       -   -      CAAATGAA     G   TA     -TA      A    TAGAAG       G                 A                              A   C                  T  -                      CAGTCTAAT        ATC  TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End