SE3810447

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8765
  • Solanum tuberosum
  • SE3810447
  • Tc1/Mariner
  • St15
  • chr12:58870986-58871249
  • N.A.
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCTATCCGTCAATCTTTA    -------   ATTCTATTTAA   -      CCGACAATAGTTGTTCAATTTGAAAATCAAGAGATAATTTAGCACTTTGTGTCTAGTTTTTCCTTGGTATCAAGTACTATTCAATATCTAAT
                     ATTG       TCC           AAT AATTGT                                                                                            
                     ||||       |||           ||| ||||||                                                                                             
                     TGTG       ATA           ATA GATAAC                                                                                            
             CAATTTAC    CAAATAC   -----------   C      TGAACCGTGTGTGGAATTCTTTGTTATTTATTATCTCTATCACAATGATATAATAGGAAATTTATATAATTTAAATTATGAAACTTTTTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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