SE3830449

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8767
  • Solanum tuberosum
  • SE3830449
  • hAT
  • Hat24
  • chr12:56975649-56976280
  • ATCAAAAT
  • AATTAGGGGTGTGCAT

Secondary structure and sequence

TSD    TIR
5'



3'
ATCAA                A   C  --    -------------- AAAAAGTGTTATTGGTTTATTGTTATTGGGTTATTGGACTGATGGATTTTTTAATGGTTTTATAAAAAAAAATTATCGGGTTATCGCGTTCGGTATTGATTTTTAATAATGGGTTATTGGGTAAACCGATAACCCATTAAGCCTAGTAATTTACTATATTTACTTGTACATAAATATTATATATTAATCTCAATACCTTACTAGTTACGGTCTTTATCCTTTAGCCTTCAATTCACACTTCAAAGTGACTTTTAGTTCACAACTTCACATTATAT
     AATTAGGGGTGTGCAT AAC GA  ACCG              A                                                                                                                                                                                                                                                                                   
     |||||||||||||||| ||| ||  ||||              |                                                                                                                                                                                                                                                                                   A
     TTAATCCCTACACGTA CCA GT  AACC              A                                                                                                                                                                                                                                                                                   
TAAAA                G   -  CA    AATCCAAAATACAT ATAGCCAAGCCAAATAACCAAAAGCCAAAAATTTATGCAGTTTAGTTATTGGTTTGGTTATTCTCTAAAAAATAGCCAAAGAAAAATAGCCAAAACCAGGAATTACCAAGCCAAAAGCCAAATTGGTTATTCTTTTATGAATATTTTATTTATATACTGAAGAGATTATTTAAACTGCGTTGTTGTGTTATTACATTATTTTTTTTGATATGTTTACATTGTGTTTCTCTTTAATTCTCCTTATCCCATGAATAAAATCTAAAACTGCACGACAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End