SE3850451

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8769
  • Solanum tuberosum
  • SE3850451
  • PIF/harbinger
  • To13
  • PGSC0003DMB000000458:200080-200771
  • TAA
  • AGGGTCTGTTTGGAAAGCCACCTGGTAATTGG

Secondary structure and sequence

TSD    TIR
5'



3'
TA               A     -C   T      --------------A   G     - - -       G    AATTACTAGCCTAGTAATTACACGAGTCTAGTAATTACATTGACCTGTTTGGTTGTCACAGTGTAATTACAGTGTAATTCCCTTTGTCCTGTTTGGTTGGACGAATGTAATTACACAGTTAAATTTTAAAATAGATCAGATTTTGAATAAATAATATTACTATGTATAACTGATTGTTAGAATCGAATTTTATAATTCTCATATTTATTTTAATCTCAAAACTAACAGGAGAAAATACAAAAATAAAATTCATACATAATCTACCTAGACATCAAAATAT
  AGGGTCTGTTTGGAA GCCAC  TGG AATTGG               ATT GTGTA A T TACTAGG TAGT                                                                                                                                                                                                                                                                                        
  ||||||||||||||| |||||  ||| ||||||               ||| ||||| | | ||||||| ||||                                                                                                                                                                                                                                                                                        G
  TCCCGGACAAACTTT CGGTG  ACC TTAACC               CAC ATTAA G G GAAACAG GACA                                                                                                                                                                                                                                                                                        
AA               C     TT   -      CTTAATCACATTAAC   -     T A A       -    AACCATCTGGTTCATTAATGAACCATTCTCCCCTTAACCCACATTAACTTCCCCTCATTAATGTGAGGAGTTAAGGGTTCCCTCTCATTCCTTAACTCACATTAATGTGGTACATTAATGTACTTAAAAAATTATAATATAAAAAAATTATATAAAAACAAACCTTTTCTGTGAAGAAGGAAAAAACAGACGTGTAAAGGTAAAGATTCTTGCCGTCGTGTCGTTGTTCGGTACATGAAGAAGAAAGTTCATTCTAAATAAAGAACTAAGTAAAATGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End