SE3820452

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8770
  • Solanum tuberosum
  • SE3820452
  • Mutator
  • M55
  • chr05:116572-116965
  • TTATAAGAA
  • TTATAAGAAGAAAGAAGTATTGATACACTTCTAAACTTATAGTAAATTATTAGTTTCGTTTCCAAACTATTGACAGCCTTAAAAATATTCTTCTACTCGACTAACTGAACTTAAATACACCTCTGATCTGGCCACATGGTGAAATA

Secondary structure and sequence

TSD    TIR
5'



3'
           A  AA          ---T      CTA     ATA             ----       CC   C     A              T         C        G  C        ---    C       GC         A    CACCC  -     CTCGCCAAGTTTAGATATGCTTTCAATACTTCTCTC
   TTATAAGA GA  GAAGTATTGA    ACACTT   AACTT   GTAAATTATTAGT    TTCGTTT  AAA TATTG CAGCCTTAAAAATA TCTTCTACT GACTAACT AA TTAAATAC   ACCT TGATCTG  CACATGGTG AATA     CT AAATT                                    
   |||||||| ||  ||||||||||    ||||||   |||||   |||||||||||||    |||||||  ||| ||||| |||||||||||||| ||||||||| |||||||| || ||||||||   |||| |||||||  ||||||||| ||||     || |||||                                    G
   AATATTCT CT  TTTCATAACT    TGTGAA   TTGAA   CATTTAATAATCG    AAGTAGG  TTT ATAAC GTCGGAATTTTTGT AGAAGATGA CTGATTGA TT AATTTATG   TGGG ACTAGAC  GTGTACCGT TTGT     AC AGAGT                                    
AAG        -  --          TCTC      --C     CTG             ATCA       AA   A     A              T         A        G  A        TCA    A       -A         A    ---TC  C     TTGAGAACATGCTCGCAGCCCAAGAATTATCTTTCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End