SE3830454

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8772
  • Solanum tuberosum
  • SE3830454
  • hAT
  • Hat41
  • chr02:54587854-54588294
  • TTCACAGA
  • GACAGTGACGAATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCACA     T A  A     GAATTTTC             GAAAAA    A  ATAAACGTGTAAATAAGCCTTTAGAAATGGAAACCTTGAATTCTTTTGGGTTTAAAACCAAACTTTTAACATATTTTTTAAAGTAAAAAAAAAAAACTATAAAAAACTTGAAAAACAGAACTGAAAATTAAAAAGAAAACTGAAACTGAAAAAGAAAAAAATAAAGTGC
      GACAG G CG ATCCA        GTTCAGGGGGTTC      TATA GT                                                                                                                                                                         
      ||||| | || |||||        |||||||||||||      |||| ||                                                                                                                                                                          
      TTGTC C GC TGGGT        TAGGTCCCCCAAG      TGGG CT                                                                                                                                                                         
AGACAC     C C  C     --GCACCA             ------    -  TGGGGGAACCGTTTTTAATGTGCCATATATATTCCATTTAAAAGATATAAAGACATCTATATATATATATATATAAAACTTGGGAGAGTTATTGTTTCTCTTTGACTACCGCGTCACCGTTTATGGGGACTTTAATTCAACATGTAGTGACCTAGCTTAGGGTCACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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