SE3830455

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8773
  • Solanum tuberosum
  • SE3830455
  • hAT
  • Hat37
  • chr05:7855267-7855741
  • TACATACC
  • AGGGCGGACCCACGTTGGTTCCAGGGGGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACATACCCA  -          ---CG  G    C         ---------AC    ACCCCCTCGGCAAAAAATTACACTGTATATATAAGGTAATTTTCTGTATTTATGTGTATATATATATTTTGAACCCCCTCAATGACAAGGAGAAAGAGATAGCCTAGTGGCAAGTTCCCTGAAAATTAAGCCTTACGTCGAGGGTTCGAATCCCTGCATTAGCGTTTTATTTTTTTCTTTTCCAG
          AG GGCGGACCCA     TT GTTC AGGGGGTTC           CCGA                                                                                                                                                                                         
          || ||||||||||     || |||| |||||||||           ||||                                                                                                                                                                                          
          TC CCGCCTGGGT     AA CAAG TCCCCCAAG           CATA                                                                                                                                                                                         
 CCATACATG  A          CCTAA  G    -         CTTTTTATTTT    TTTGTACATATATATTCGGTTGTTTTGTTTTAGAGTTCTTTCATCATCATAAATCAAAATCACCGCCTGGGAACTTAAAAAAACCCAAATTTTGGTGTGAAAATCGTACAAAATATTTTTTTTTTTGATTTTTTTTGCAGTTTTTGCCTTGACTTTGGAAATTTTTTTTTTTTTTTTTTGACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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