SE3830456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8774
  • Solanum tuberosum
  • SE3830456
  • hAT
  • Hat28
  • chr03:19068092-19068291
  • GATAGGTC
  • GTCCAATGGCGGAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GATAG                AAA     AACTAAGGGGTGTCAAAATATAAATTAAAGAAGTAGAAGTCAAGGAGTGTCAATATGTAATATATATACATA
     GTCCAATGGCGGAGCC   ACTTC                                                                        
     ||||||||||||||||   |||||                                                                        A
     TAGGTTACCGCCTCGG   TGTGT                                                                        
TTGGA                ---     ACGTCAACTCCCAACAGCTGGCTGTGGGGAAACAACCTTTTAATGTGACACATCAATCTCATTTTTATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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