Plant MITE

SE3820461

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8779
Solanum tuberosum
SE3820461
Mutator
M42
chr01:3036970-3037290
TATTATTTC
GGCATAATACATAAACCAGCACTTAAACTTGGCCTCAACAGGCAAGTAAGCAATTCAACTTTGAGAGTGTACATCTAGACACCTCAACTGGC

Secondary structure and sequence

TSD TIR

5'

3'

TATTATTTC              AC   -                  A A         G  A            A        CT             G - AACTAA  --   CCAACTCGTCCCCACTATATTTTGTGGACACCCCTAATGTGGCACATAAA
         GGCATAATACATAA  CAG CACTTAAACTTGGCCTCA C GGCAAGTAA CA TTCAACTTTGAG GTGTACAT  AGACACCTCAACT G C      AC  ACT                                                  
         ||||||||||||||  ||| |||||||||||||||||| | ||||||||| || |||||||||||| ||||||||  ||||||||||||| | |      ||  |||                                                  T
         CCGTATTATGTATT  GTC GTGAGTTTGAACCGGAGT G CCGTTCATT GT AGGTTGAAACTC TACGTGTG  TCTGTGGAGTTGA C G      AG  GAC                                                  
CTTTATTAT              -C   T                  C A         G  G            A        -T             G A ------  GC   ACAGTCAACTTGTGAGGTTGAATGTTTTACTAGTAGATCTGTGGAGGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820461

TATTATTTCGGCATAATACATAAACCAGCACTTAAACTTGGCCTCAACAGGCAAGTAAGCAATTCAACTTTGAGAGTGTACATCTAGACACCTCAACTGGCAACTAAACACTCCAACTCGTCCCCACTATATTTTGTGGACACCCCTAATGTGGCACATAAATTTTGGAGGTGTCTAGATGATCATTTTGTAAGTTGGAGTGTTCAACTGACACAGCGGAGACGAGTTGAGGTGTCTTGTGTGCATACTCAAAGTTGGAGTGGTTACTTGCCAGCTGAGGCCAAGTTTGAGTGTCTGCTTATGTATTATGCCTATTATTTC

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