SE3850463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8781
  • Solanum tuberosum
  • SE3850463
  • PIF/harbinger
  • To14
  • chr07:8912952-8913157
  • TAA
  • AGGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             CATCACTAATCCCGGGATCAGTTTTAGGATGAGTTTATCCCATGTTTGGTTGGGATAAAGCTGCTGGATAACTTATCCCGGGATTAGT
  AGGGCTCGGTTGG                                                                                        
  |||||||||||||                                                                                         
  TCCTGAGCAAACC                                                                                        
AA             AACCCTTGTTCAATAGGACTCTAATCAATAGGTTCCTAACAATAGGTGGGACTTACACCCTATTTTTATCGTGATGTTAGGGCTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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