Plant MITE

SE3810465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8783
Solanum tuberosum
SE3810465
Tc1/Mariner
St1
chr03:10841802-10842078
TA
TACTCCCTCTGTTCCTAATTACTTGTCCATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        C               G         GAATTTGCAC        ---A AA  CAATGATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTGTGAAATAGATGAATTAAAAACTTAAGATTTTCAAGA
TACTCCCT TGTTCCTAATTACTT TCCATTTTT          ACTTATTA    G  AA                                                                                
|||||||| ||||||||||||||| |||||||||          ||||||||    |  ||                                                                                 
ATGAGGGA ACAGGGATTAATGAA AGGTGAAAA          AACAAGGA    T  GA                                                                                
        A               G         GGAAAAAATC        TTAA --  ACAGGTAAAACTGTTTAGTTCTTTCTTGTTAAAAAAATGGATAATATAGGAGTTAATTAATGAAACTTTTTCCATTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810465

TACTCCCTCTGTTCCTAATTACTTGTCCATTTTTGAATTTGCACACTTATTAAGAAAACAATGATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTGTGAAATAGATGAATTAAAAACTTAAGATTTTCAAGAAGTTTTACCTTTTTCAAAGTAATTAATTGAGGATATAATAGGTAAAAAAATTGTTCTTTCTTGATTTGTCAAAATGGACAAGTAATTAGGAACAACTAAAAAAGGAAAAGTGGAGAAGTAATTAGGGACAAAGGGAGTA

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