SE3830466

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8784
  • Solanum tuberosum
  • SE3830466
  • hAT
  • Hat3
  • chr12:25639856-25640056
  • TCAGCAAG
  • GCAAGCAGTAGCGGAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3'
TCA  AA    TA      C   AAATTT    AA         AAA     GAAGTAAACACA   ACTAGTGGAAGGGGGTTCGACATCTATTATACATACCTAAAA
   GC  GCAG  GCGGAG CAG      TAAT  GGGGGTTCA   TCTGA            CGA                                          
   ||  ||||  |||||| |||      ||||  |||||||||   |||||            |||                                          A
   CG  TGTC  CGCCTC GTC      ATTA  TCCCCAAGT   AGGCT            TGG                                          
GAA  AC    CC      C   --GTAT    -C         ---     ------------   GGAGCCGTTTTTTATAATGATAAATATGTACCAATTTTAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End