SE3820467

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8785
  • Solanum tuberosum
  • SE3820467
  • Mutator
  • M3
  • chr05:10721539-10721890
  • TAAATATTT
  • AAATATTTGGGAAAAAGGACAAATATATCCCCAAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -       A   C       T    A    ATCGTAAATGA              C       C                -  A              A                   CACT     AGAAGA  AAATAGGGACACATGTCACAATCTTATCCGTCCATCCGATATT
 AAATATTT GGGAAAA GGA AAATATA CCCC AACT           TATGTAGATACCCT CGTCATA TTTTGGGACATTGGTG CC TTGTCGTCTAAAAA CTAGAGCATATATGTCATT    CTAAC      CT                                           
 |||||||| ||||||| ||| ||||||| |||| ||||           |||||||||||||| ||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||    |||||      ||                                           T
 TTTATAAA CCCTTTT CCT TTTATAT GGGG TTGA           ATACGTCTATGGGA GCAGTAT AAAATCCTGTGACCAC GG GATAGCAGGTTTTT GATTTCGTATATATAGTAA    GATTG      CC                                           
         T       C   A       -    C    -----------              A       A                A  -              -                   ATAT     ------  TGTATGTTCACAGTATTAGAATAGGTGGCTAGGCTGTAAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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