SE3830468

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8786
  • Solanum tuberosum
  • SE3830468
  • hAT
  • Hat17
  • chr07:42300037-42300439
  • ATGGTAGG
  • CAGTGGCGGATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGGTAGG              TTAA   ATGTGAGGGTGCCATGCCACCCCCGAACTTCGACGGAAACTCTATATATACATATGTATATATATATATAATATTTATATTTATATAAAGCGTGCCACCCAAAGAACAAAATTGGCTTGTGGTGCCACGGTAGGAGAGCAACTTTAGAAGGCTGATGTTGCGGGTTCGAATCCCA
        CAGTGGCGGATCTA    GGC                                                                                                                                                                               
        ||||||||||||||    |||                                                                                                                                                                                
        GTCACCGCCTAGGT    CCT                                                                                                                                                                               
 GATGGTA              ----   AAATTTGAGGCACCCACAGTTTTATCTGAATAGCTAATTTAATTAAAATATAAACTAATTTAATAAGTAGAAAAGCTATATTTAATTAAAATCAAGAGATTAAAAAGAATTTTCTTGCACACGTCGTTAAAGTAAAAAGAATTTTCCTACATAAAGAGTTTTTTTATCCATGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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