Plant MITE

SE3820469

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8787
Solanum tuberosum
SE3820469
Mutator
M16
chr01:34717569-34718256
GAAATAAAA
AGAAAAAAGGCCCAAAATAGCCCCTCATCTTTGGGTTAAGACTCAAAGTCATCTTTGAGTTTCACATGGAGCATTAATAGTCTCTCAT

Secondary structure and sequence

TSD TIR

5'

3'

  GAAATAAA   AAA              C              -                           -                    TC    ----  -   CAATATTGGTGCACTTTTGGTTCTCCTTCAAAATTTTGCCTATTTTTTAACATTGATTTTATTCATAATTTATGTATGGAATGTTTAATCGTCATTTTATATATTTAGTAGAAATAATAACTCAATGTGAGAGATTGTGAGAAGAAAAACACCTTATTTTGTTTAGTAGAAATTGTATTGCAGGTAAAGTCGATAGGTTCATCACGACGATTTCACGTACAATAGTACAAATTTTTCTT
          AGA   AAGGCCCAAAATAG CCCTCATCTTTGGG TTAAGACTCAAAGTCATCTTTGAGTTT CACATGGAGCATTAATAGTC  TCAT    GT TTG                                                                                                                                                                                                                                               
          |||   |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||    || |||                                                                                                                                                                                                                                               T
          TCT   TTCCGGGTTTTATC GGGAGTAGAAACCC AATTCTGAGTTTCAGTAGGAATTCAAA GTGTACCTCGTGATTATCAG  AGTA    TC TGA                                                                                                                                                                                                                                               
AAAATAAAGC   --C              A              C                           A                    TA    TACC  G   TTATCAGGGAATACAAACATTATAACTACGTGAAAACCAGGAGGGGATTTGAAAACGGATAAAAAATTGTAATTAAAACAAGTATTAAAATACATTCCTTACAGGGTAGCAGAAAAATATATAAATCATCTTTATTATTGAGATACACTCTCTTCTACTCTTCTTCTTATGGAACAATACAAGCCATATTTATAATGACGTCGATTTGATTCTTGTAAAATTGCATACTGTAACGTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820469

GAAATAAAAGAAAAAAGGCCCAAAATAGCCCCTCATCTTTGGGTTAAGACTCAAAGTCATCTTTGAGTTTCACATGGAGCATTAATAGTCTCTCATGTTTGCAATATTGGTGCACTTTTGGTTCTCCTTCAAAATTTTGCCTATTTTTTAACATTGATTTTATTCATAATTTATGTATGGAATGTTTAATCGTCATTTTATATATTTAGTAGAAATAATAACTCAATGTGAGAGATTGTGAGAAGAAAAACACCTTATTTTGTTTAGTAGAAATTGTATTGCAGGTAAAGTCGATAGGTTCATCACGACGATTTCACGTACAATAGTACAAATTTTTCTTTTCTTGCAATGTCATACGTTAAAATGTTCTTAGTTTAGCTGCAGTAATATTTATACCGAACATAACAAGGTATTCTTCTTCTCATCTTCTCTCACATAGAGTTATTATTTCTACTAAATATATAAAAAGACGATGGGACATTCCTTACATAAAATTATGAACAAAATTAATGTTAAAAAATAGGCAAAAGTTTAGGGGAGGACCAAAAGTGCATCAATATTACAAACATAAGGGACTATTAGTGCTCCATATGAATGACTATTAGTGCTCCATGTGAAAACTTAAGGATGACTTTGAGTCTTAACCCCAAAGATGAGGGACTATTTTGGGCCTTCTCTCGAAATAAAA

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