Plant MITE

SE3820470

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8788
Solanum tuberosum
SE3820470
Mutator
M6
chr06:37061430-37061744
TTTTAAGAA
TTTTAAGAAGGGAAAAGGGTTCGAAATATATCTAAACTTTGATCAAAATTGCTGTAACAATACTAAACTTTAGAAATGACCTTTCACCACCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCCACGTGGACACGTTACTGTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

     A                C         C            A      C     CA     A      A            C   AC                                                    -   TAC    -   AA
 TTTT AGAAGGGAAAAGGGTT GAAATATAT TAAACTTTGATC AAATTG TGTAA  ATACT AACTTT GAAATGACCTTT ACC  CCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCCACGTGGACA CGT   TGTT TAT  
 |||| |||||||||||||||| ||||||||| |||||||||||| |||||| |||||  ||||| |||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||| |||   
 AAGA TTTTCCCTTTTTCCAA CTTTATATA GTTTGAAACTAG TTTAAC ACATT  TATGG TTGAAA CTTTACTGGAAA TGG  GGACGTGATAAATTATCACATAAAATTTCCATATATACACGGGTGCACCTGT GTA   ATAA GTA  
C    A                A         A            C      T     AC     C      A            A   --                                                    A   TTT    C   GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820470

TTTTAAGAAGGGAAAAGGGTTCGAAATATATCTAAACTTTGATCAAAATTGCTGTAACAATACTAAACTTTAGAAATGACCTTTCACCACCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCCACGTGGACACGTTACTGTTTATAATGATGCAATATTTATGATGTCCACGTGGGCACATATATACCTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCATTTCAAAAGTTCGGTATCATTACATCAATTTCGATCAAAGTTTGAATATATTTCAAACCTTTTTCCCTTTTAAGAAC

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