Plant MITE

SE3820471

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8789
Solanum tuberosum
SE3820471
Mutator
M6
chr01:5578307-5578620
TAAATAGTA
TAGGGAAAAAGGTTTGAAATATATTCGAACTTTGACAGAAATTGTTGTTACGATACCGAACTTTGGAAAGGACCTTTTACCCCTCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTCTCCACGTGGACATCATAAATATT

Secondary structure and sequence

TSD TIR

5'

3'

TAAATAG         A         T     CG       A A                            GA                 CT                                    C            T   AAA    GCATC
       TAGGGAAAA GGTTTGAAA ATATT  AACTTTG C GAAATTGTTGTTACGATACCGAACTTTG  AAGGACCTTTTACCCCT  GCACTATTTAATAGTGTATTTTAAAGGTATATATGT TCCACGTGGACA CAT   TATT     
       ||||||||| ||||||||| |||||  ||||||| | ||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||   ||||     G
       ATCCCTTTT CCAGACTTT TATGA  TTGAAAC G CTTTAACAACAATGCTATGGTTTGAAAT  TTCCTGGAAAATGGGGA  TGTGATAAATTATCACATAAAATTTCCATATATACA GGGTGCACCTGT GTA   ATAA     
ATGATAA         A         T     AG       C G                            AC                 --                                    C            -   ATG    ATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820471

TAAATAGTAGGGAAAAAGGTTTGAAATATATTCGAACTTTGACAGAAATTGTTGTTACGATACCGAACTTTGGAAAGGACCTTTTACCCCTCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTCTCCACGTGGACATCATAAATATTGCATCGTTATAAATAGTAATGTGTCCACGTGGGCACATATATACCTTTAAAATACACTATTAAATAGTGTAGGGGTAAAAGGTCCTTCATAAAGTTTGGTATCGTAACAACAATTTCGGCCAAAGTTGAAGTATTTTTCAGACCATTTTCCCTAAATAGTA

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