SE3810472

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8790
  • Solanum tuberosum
  • SE3810472
  • Tc1/Mariner
  • St15
  • chr10:46491094-46491360
  • TA
  • TACTCCCTCTGTCCAACAATAATTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
        CT    A      A             AC  -  CA ACCCCTAAAGAAACAATAAATAATAGAGGTAATATTACTATATTATCCTTTGACTTTATTAAATTTAATGTTTTGAGAAATGTGTTAGATG
TACTCCCT  GTCC ACAATA TTGTCCTCTATTG  TT GT  C                                                                                           
||||||||  |||| |||||| |||||||||||||  || ||  |                                                                                            
ATGAGGGA  CAGG TGTTAT AACAAGTGATATG  AT TT  T                                                                                           
        AC    A      C             --  T  -- ATCAACAGGTTGTTATGAACAAGTTAAATCTTTTAGTTCTCTATTAAATGGAAAACATTGCTAAAATGGAAACGATAATTTATAATAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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