SE3820473

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8791
  • Solanum tuberosum
  • SE3820473
  • Mutator
  • M11
  • PGSC0003DMB000000875:47488-47812
  • TAATTTTTA
  • TTAGGGAAAAGGTACAAGTACCCCCCTAAACTATAACCGAAATTCCAGAGATACACCTTAACTAAACTAAGGTCCTATTACCCCTGAATCCAATTTTTTTTGGTAATTTTGTGCACCTTTTTGGCTTACGTGGCATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTT       A               C  TAA     A         C                                            CCA         G             CC      G            --  AAATAT    C     CCT
      TTAGGGA AAGGTACAAGTACCC CC   ACTAT ACCGAAATT CAGAGATACACCTTAACTAAACTAAGGTCCTATTACCCCTGAAT   ATTTTTTTT GTAATTTTGTGCA  TTTTTG CTTACGTGGCAT  TC      CTTC ACGCG   
      ||||||| ||||||||||||||| ||   ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||  |||||| ||||||||||||  ||      |||| |||||   C
      AATCCCT TTCTGTGTTCATGGG GG   TGATA TGGCTTTAG GTCTCTGTGTGGAATTGATTTGATTTCAGGATAATGGGGACTTG   TAAAAAAAA CATTAAAACATGT  AAAAAC GAATGCACCGTG  AG      GAAG TGCGT   
ATTTTT       A               A  TTC     C         A                                            -AA         A             -A      A            TG  -GCACT    -     TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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