Plant MITE

SE3810477

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8795
Solanum tuberosum
SE3810477
Tc1/Mariner
St1
chr06:51813839-51814117
TA
TACTCCCTCT

Secondary structure and sequence

TSD TIR

5'

3'

          ----------------    CTAATTACTTGTCCACTTTTGAATTGACACACCTATTAAGAAAGTAATTATTGACATAGTGAGTTTACCATTTTGCCCCTATTAAGTATGAAGTGGATGGATTAAAAATTTAAGATT
TACTCCCTCT                GTCC                                                                                                                     
||||||||||                ||||                                                                                                                     T
ATGAGGGAGA                GATA                                                                                                                     
          CAGGAATTAATGAACA    AAAAGGAAAATATCAACAGGGATTAATGAACAGGTAAAACTGTTTAGTTCTTTCCTGTTTTATTAAAATGGATAATATGGGAGTTAATTAATAAAACTTTTTCCATGTTAAAGAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810477

TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGACACACCTATTAAGAAAGTAATTATTGACATAGTGAGTTTACCATTTTGCCCCTATTAAGTATGAAGTGGATGGATTAAAAATTTAAGATTTGCAAGAAATTGTACCTTTTTCAAAATAATTAATTGAGGGTATAATAGGTAAAATTATTTTGTCCTTTCTTGATTTGTCAAAATGGACAAGTAATTAGGGACAACTATAAAAGGAAAAATAGACAAGTAATTAAGGACAGAGGGAGTA

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