SE3830482

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8800
  • Solanum tuberosum
  • SE3830482
  • hAT
  • Hat58
  • chr01:1006838-1006972
  • AGGAATAA
  • CTATGTTGCTCGGACTCTTCAAAAATGTTGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGGAATAA    G                     -    T  GGTG     C              CCA
        CTAT TTGCTCGGACTCTTCAAAAAT GTTG CA    TGTGT GGATCTTCCAAAAG   
        |||| ||||||||||||||||||||| |||| ||    ||||| ||||||||||||||   T
        GATA AACGAGCCTGGGAGGTTTTTA CAAC GT    GTACA TCTAGGAGGTTTTT   
AAAAAGGA    A                     T    -  --GG     A              ACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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