SE3830483

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8801
  • Solanum tuberosum
  • SE3830483
  • hAT
  • Hat19
  • chr07:1047621-1047757
  • GTTATCAC
  • ACCTATGTTGCTCGGACTCTTCAATAATGTCAAGGGGTGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGACATGGGTGCGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTATC     T     T           ---ATA     AAG G  G            G         G
      ACCTA GTTGC CGGACTCTTCA      ATGTC   G GT CGTGTCGGATTC CCAAAAGTA 
      ||||| ||||| |||||||||||      |||||   | || |||||||||||| ||||||||| T
      TGGAT CAACG GTTTGAGAAGT      TACGG   C TG GTACAGCCTAAG GGTTTTTAT 
CACTAT     T     C           GAAAGC     --- G  G            A         G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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