SE3810484

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8802
  • Solanum tuberosum
  • SE3810484
  • Tc1/Mariner
  • St4
  • chr10:39564391-39564653
  • TA
  • TACTCCCTCCGTCCACAATTAATTGTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
      C         AA           AATTTCCA    T       AACATATAAAAA      CTAACATTTTAC  TCTATTTTTCATCATATTGATATGCAAAAACTTGCAATTAATAGTATTTTTCGTGTAGTTTT
TACTCC TCCGTCCAC  TTAATTGTCAT        TTTC AGAGTCA            ATTTGA            GA                                                              
|||||| |||||||||  |||||||||||        |||| |||||||            ||||||            ||                                                               
ATGAGG AGGCAGGTG  AATTAACAGTA        AAAG TTTCAGT            TAAACT            AT                                                              
      A         AA           CAACGCTA    C       ------------      -----------A  TAAAAGTTTCAATTTAATCTAAAGTAATTAAACTATAAAATTTGTATTTTTAATCTATAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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