SE3820487

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8805
  • Solanum tuberosum
  • SE3820487
  • Mutator
  • M11
  • chr01:20240773-20241097
  • TTATTTTAT
  • GGGAAAATGTACAAGTAACATCCTAAACTATGACCGAAATCCCAAAGACACACCTTAACTAAACTAAGGTCCTATTACCCCCTGAAACCATTTTTTTTGTAATTTTGTGCACCTTTTTGGCTTATGTGGCATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTTAT    A  T   C     ACA     A               C  A                  C                   GA   -C                            T G           ---   AAATA   T       CCT
         GGGA AA GTA AAGTA   TCCTA ACTATGACCGAAATC CA AGACACACCTTAACTAAA TAAGGTCCTATTACCCCCT  AAC  ATTTTTTTTGTAATTTTGTGCACCTTTT G CTTATGTGGCA   TCC     TCT CCACGCG   
         |||| || ||| |||||   ||||| ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||  |||  |||||||||||||||||||||||||||| | |||||||||||   |||     ||| |||||||   C
         CCCT TT CGT TTCAT   GGGAT TGATACTGGCTTTAG GT TCTGTGTGGGATTGATTT ATTCCAGGATAATGGGGGG  TTG  TAAAAAAAACATTAAAACATGTGGAAAA C GAATGCACCGT   AGG     AGA GGTGCGT   
TATTTTATT    A  C   A     GGG     C               A  C                  T                   AC   AA                            - A           GTG   --CAC   -       TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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