Plant MITE

SE3810489

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8807
Solanum tuberosum
SE3810489
Tc1/Mariner
St13
chr05:21335884-21336137
TA
TACTCCCTCTGTTTCAAAAAGAATGGTCT

Secondary structure and sequence

TSD TIR

5'

3'

                      A      CCTTTCGT      ---TC  -----       ----    ATGACCTATTTCCTTTTTTGGTAACATTATAATTTCAGCTTTCCACGTGGCATGTTTAAGGCCACA
TACTCCCTCTGTTTCAAAAAGA TGGTCT        TTATAG     TG     TTTCAAA    AAGA                                                                  
|||||||||||||||||||||| ||||||        ||||||     ||     |||||||    ||||                                                                   
ATGAGGGAGGCAAAGTTTTTCT ACCGGA        AAACTG     TG     AAATCTT    TTCT                                                                  
                      C      ------TC      AACCG  TCTCA       TTAT    TCTGAAAACTTAGAACACCAGGATTTAATTTCAATACAGTTTACATGATTTTAACGGGAGATTAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810489

TACTCCCTCTGTTTCAAAAAGAATGGTCTCCTTTCGTTTATAGTCTGTTTCAAAAAGAATGACCTATTTCCTTTTTTGGTAACATTATAATTTCAGCTTTCCACGTGGCATGTTTAAGGCCACAAGATTAGAGGGCAATTTTAGTACATTTGACATAACTTTAATTTAGGACCACAAGATTCAAAAGTCTTCTTTATTTTCTAAAACTCTGTGCCAAGTCAAACTAGGCCACTCTTTTTGAAACGGAGGGAGTA

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