Plant MITE

SE3810490

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8808
Solanum tuberosum
SE3810490
Tc1/Mariner
St13
chr09:41228415-41228665
TA
TACTCCCTCCGTTTCAAAAAGATTGGTCT

Secondary structure and sequence

TSD TIR

5'

3'

                A     T      ------------- G   ----  A    -  -   A --    ----   AATTAAAGAAGACTTTTAAATCTTGTGGTCCTAAATTAAAGTTATGTCAAATGTACAAA
TACTCCCTCCGTTTCA AAAGA TGGTCT             G TTT    GA TTGG CA CGA G  TTTA    AGA                                                           
|||||||||||||||| ||||| ||||||             | |||    || |||| || ||| |  ||||    |||                                                            
ATGAGGGAGGCAAAGT TTTCT ACTGGA             C AGT    GT TTTT AC GGA G  AGGA    ACC                                                           
                G     T      GGAAAGGAAAAAT -   CAAA  T    T  T   - AA    AAAA   ATTGTAAAATGAAAAACGAAAGGTGCACCGTATAAATTCTGGTGTTCTAATTCCCGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810490

TACTCCCTCCGTTTCAAAAAGATTGGTCTGGTTTGAATTGGCACGAAGTTTAAGAAATTAAAGAAGACTTTTAAATCTTGTGGTCCTAAATTAAAGTTATGTCAAATGTACAAAATTGCCCTTAATCTTGTGGTCTTAAATATGCCACGTGGAAAGCAAAAAGTAAAATGTTACCAAAAAAGGAAAGAGGTCATTTTTTTGAAACTGACTAAAAAGGAAAGGAGGTCATTCTTTGTGAAACGGAGGGAGTA

Copy Cancel