Plant MITE

SE3820492

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8810
Solanum tuberosum
SE3820492
Mutator
M6
chr12:62708016-62708325
TTTAAAATA
TTTAAAATAGGGGAAAATGTCTGAAATATATCCGAACTCTGACCGAAATTGTTGTAATAATCTCAAACTTTGGGAAGGACTTATTACCCCTCACTATTTAATAGTGTATTTTAAAGATATATAAGTGTCCAGCTGGACAT

Secondary structure and sequence

TSD TIR

5'

3'

        AAT        AT  C  A              C    C                     A        A             C  -  C                 T           A       GC       -GTTAC    -   AA
   TTTAA   AGGGGAAA  GT TG AATATATCCGAACT TGAC GAAATTGTTGTAATAATCTCA ACTTTGGG AGGACTTATTACC CT CA TATTTAATAGTGTATTT AAAGATATATA GTGTCCA  TGGACAT      TATT TAT  
   |||||   ||||||||  || || |||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| || || ||||||||||||||||| ||||||||||| |||||||  |||||||      |||| |||   
   AAATT   TCCCTTTT  CA GC TTATATAGGTTTGA ACTG CTTTAACGACATTGTTAGAGT TGAAACCC TCCTGGATAATGG GA GT ATAAATTATCATATAAA TTTCTATATAT CATAGGT  ACCTGTA      ATAA GTA  
ATA     ---        CC  A  C              A    A                     A        G             A  C  A                 -           C       GC       GTATTT    C   GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820492

TTTAAAATAGGGGAAAATGTCTGAAATATATCCGAACTCTGACCGAAATTGTTGTAATAATCTCAAACTTTGGGAAGGACTTATTACCCCTCACTATTTAATAGTGTATTTTAAAGATATATAAGTGTCCAGCTGGACATGTTACTATTTATAATGATGCAATATTTATGATGTCCACGTGGATACCTATATATCTTTAAATATACTATTAAATAATGCAGAGGTAATAGGTCCTGCCCAAAGTATGAGATTGTTACAGCAATTTCAGTCAAAGTTTGGATATATTCCGAACCCTTTTCCCTTTAAAATA

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