SE3820495

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8813
  • Solanum tuberosum
  • SE3820495
  • Mutator
  • M8
  • chr08:30923652-30923976
  • AAAAATCTA
  • GGGATAATACATATATTTGACCTTAAACTTGGCTTCAAATTTTAACTTTGACCTTCAACTTTCATAGTGCACAAATAGACACTTAAACTTGTATAAAGTAGAACAAGTAAACACACGAGTCCTACATGGCACAATACACGTAGGACACCACGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATCTA  G                                                               G                                A         A       A T           CAA   -----------------    A  A
         GG ATAATACATATATTTGACCTTAAACTTGGCTTCAAATTTTAACTTTGACCTTCAACTTTCATA TGCACAAATAGACACTTAAACTTGTATAAAGT GAACAAGTA ACACACG G CCTACATGGCA   TAC                 ACGT GG 
         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||   |||                 |||| || C
         CC TATTATGTATATAAACTGGAATTTGAACCGAAGTTTAAAATTGAAACTGGAGGTTGAAAGTAT ACGTGTTTATCTGTGAATTTGAACATATTTCA CTTGTTTAT TGTGTGT C GGATGTACCGT   ATG                 TGCA CC 
ATCTAAAAA  G                                                               G                                A         C       A T           AGG   TACAGTAAAAAACAGGA    -  A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3