Plant MITE

SE3810500

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8818
Solanum tuberosum
SE3810500
Tc1/Mariner
St21
chr01:32852955-32853186
N.A.
CTCCCTCC

Secondary structure and sequence

TSD TIR

5'

3'

          ATCC      T         CTTTCCTTT        TCCCAAAA      TATATTTAGCAAGTTTTCCGATTCTAAGATCCTACATGGCAAGTTTAAGATCACAAGTTTTAA
  CTCCCTCC    CAATTT AGTGTCTTA         TTAGTTTG        AGAGTC                                                               
  ||||||||    |||||| |||||||||         ||||||||        ||||||                                                                
  GAGGGAGG    GTTAAA TCACAGAAT         AATCAAAC        GTACCT                                                               
AT        CAAA      T         --------C        ------CC      TAAATACTTTATTTCCCTCTGAAAACTTAGAACACCAGAATTTAATTTCTACACACATCAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810500

CTCCCTCCATCCCAATTTTAGTGTCTTACTTTCCTTTTTAGTTTGTCCCAAAAAGAGTCTATATTTAGCAAGTTTTCCGATTCTAAGATCCTACATGGCAAGTTTAAGATCACAAGTTTTAAAGGACTACACACATCTTTAATTTAAGACCACAAGATTCAAAAGTCTCCCTTTATTTCATAAATTCCATGCCCAAACTAACTAAGACACTTAAATTGAAACGGAGGGAGTA

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