Plant MITE

SE3810501

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8819
Solanum tuberosum
SE3810501
Tc1/Mariner
St6
chr10:39761390-39761653
TA
TACTCCCTCTGTCCCAATTTATGTGGTACTTTTCGTTTTTCGAGAGTCAAACAGTTTAAGTTTGACCGGAAATTTGCGCATGGAAT

Secondary structure and sequence

TSD TIR

5'

3'

                A               T  TT        G       -     AG    A   G      GCG        -----------------C    ATCTTTTTTGAAATGAAATTTATATATTTGTA
TACTCCCTCTGTCCCA TTTATGTGGTACTTT CG  TTTCGAGA TCAAACA GTTTA  TTTG CCG AAATTT   CATGGAAT                  TTCA                                
|||||||||||||||| ||||||||||||||| ||  |||||||| ||||||| |||||  |||| ||| ||||||   ||||||||                  ||||                                A
ATGAGGGAGGCAGGGT AAATACACCGTGAAA GT  AAAGCTCT AGTTTGT CAGAT  AAAC GGT TTTAAA   GTATCTTG                  TAGT                                
                A               T  CT        A       T     AG    A   A      -AA        AAAATTTGTAAAAGTTAA    TAATAACACTGAATAACATGAAAGATGTATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810501

TACTCCCTCTGTCCCAATTTATGTGGTACTTTTCGTTTTTCGAGAGTCAAACAGTTTAAGTTTGACCGGAAATTTGCGCATGGAATCTTCAATCTTTTTTGAAATGAAATTTATATATTTGTAAACTATGTAGAAAGTACAATAAGTCACAATAATTGATAATTGAAAATGTTTAAAAGTTCTATGAAAAATTTATGGACAAAGATAGACTTGTTTGAATCTCGAAATCTGTAAAGTGCCACATAAAATGGGACGGAGGGAGTA

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