SE3810504

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8822
  • Solanum tuberosum
  • SE3810504
  • Tc1/Mariner
  • St20
  • chr01:89699615-89699871
  • TA
  • TACTCCCTCCGTTCACTTTTACTTGTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
               C             TTATTC   AAATAGATTTTCATTTTTACTTGTTACTTTTGACATATCAAGAAAAAACAATAATTTTTTTTCATGTTTTACCCTTAGCATTAAATACTTAT
TACTCCCTCCGTTCA TTTTACTTGTCAC      CTA                                                                                            
||||||||||||||| |||||||||||||      |||                                                                                            T
ATGAGGGAGGCAAGT AAAATGAACAGTG      AAA                                                                                            
               A             ----TC   CTGAACCGTGTAAGTAATTCTTTTATTAATTACTATTATCCATAAAATGGTTTGATAGGGGATAATTTACTACAAAACCTTTTACTAAACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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