SE3820505

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8823
  • Solanum tuberosum
  • SE3820505
  • Mutator
  • M38
  • chr12:62062138-62062430
  • TACTTTTAA
  • AGGCAATTATCAAAAACACACCTAAACTATCCCTTTTTCACGAGTTTCATACCTCAAACCATCCATTGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTTAAA  GC   TA          -A      C    C       A                 A C  CC        ATTAAA   C       ATCACTCCCTT        AA AAACCTAGATGCTAAGTTGGCCTACATG
          AG  AAT  TCAAAAACAC  CCTAAA TATC CTTTTTC CGAGTTTCATACCTCAA C AT  ATTGTTCC      CTA CTAAACT           TGTATTAG  C                            
          ||  |||  ||||||||||  |||||| |||| ||||||| ||||||||||||||||| | ||  ||||||||      ||| |||||||           ||||||||  |                             
          TC  TTA  AGTTTTTGTG  GGATTT ATAG GAAAAAG GCTCAAAGTATGGAGTT G TA  TAACAAGG      GAT GATTTGA           ACTTAACT  T                            
AATTTTCATC  AA   CC          GG      A    T       C                 - A  AA        GAAATG   A       -----GTTATA        GG TTATAAATAAAGGTTAGGTATTGTCCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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