SE3850506

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8824
  • Solanum tuberosum
  • SE3850506
  • PIF/harbinger
  • To7
  • chr12:62425634-62425868
  • TTA
  • AGGGGTCGTTTGGTTGGGAACAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              -  -    --C    --TATC   --       ---TTAT  -      --------------------TA     -CC                     A    ---------      AA
  AGGGGTCGTTTGGT TG GGAA   AAGT      CCA  GGATTAG       TG TGGGAT                      GCTAT   TGGGATAACTTATCCCACCAT TATA         TGGGAT  
  |||||||||||||| || ||||   ||||      |||  |||||||       || ||||||                      |||||   ||||||||||||||||||||| ||||         ||||||  C
  TCCCCAGCAAACCA AC CCTT   TTTA      GGT  CCTAGTC       AC ACCCTA                      CGGTA   ACCCTATTGAATAGGGTGGTA ATAT         ACCCTA  
AT              C  T    ATT    TTTATC   AC       TTTTATC  T      TTTAAAACACAGAACAAACCAA     CAA                     A    GGTATCACC      CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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