SE3830507

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8825
  • Solanum tuberosum
  • SE3830507
  • hAT
  • Hat10
  • chr09:4583373-4583845
  • ATGTCCAC
  • TGTCCACCTAAGTTACTCAGACT

Secondary structure and sequence

TSD    TIR
5'



3' 
A  TC  C       A   A    CTT    TTTGGTGCCGCACCCGCGTCGACACGACATGGGTGTGGGTGTCGGTGTGGGATCCGTGTCCAATTTGGTCAACCGATTTTGGTTACTTTGACAAAAATCGATGGGGAAAGTCTGGACAGTTTTAATGATTTCCATAATCAATACAAAAGCTAGGGTGAAATTGAAGAAAATAGAATACCTTTTATATAGAAATTTCTATTGTCACT
 TG  CA CTAAGTT CTC GACT   CACT                                                                                                                                                                                                              
 ||  || ||||||| ||| ||||   ||||                                                                                                                                                                                                               
 AC  GT GATTCAA GAG CTGA   CCAC                                                                                                                                                                                                              
C  CT  A       C   C    -AC    GCCCACAGGTTATGCCCACGCCTAGGTCTCCAGCCTAGGAAGTACTAGATTAAAAATTCTAAGCCCCTATACCTAGGTACATACCTATTCCCACGCCGCTAAGCGGATTTTTATTAATTTTATAGATTTTTATATCAATATTTTGGATTTATTACTCTATAATACTCTTGAACTCCTCTTAGAACCTTACTCTAATTTCCTTTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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