SE3820510

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8828
  • Solanum tuberosum
  • SE3820510
  • Mutator
  • M57
  • chr01:70735760-70736248
  • TTTATTATA
  • TATTATAGGGAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   T       -A    ATATGAA   A     TATT  T   A   -AA         CC       ATTTTAAT   AATTCGCAGCAAACATCCCCCTTTTTTTTGCCATCTGATTTGATAGACAATTAGCCATTTTCGGTATACAATTAGCCATTTTATACATTTCGGTATAAAATGTATAAAATGCGTTTGTGTTTATATAGAGCGAGAGAAAAGTGTATATACAAATACAAATACATATATT
  TAT ATAGGGA  AATT       ATA CAAAC    AA TCA ATT   ATGTTATAG  ATAGTTT        TGT                                                                                                                                                                         
  ||| |||||||  ||||       ||| |||||    || ||| |||   |||||||||  |||||||        |||                                                                                                                                                                         T
  ATA TATTTCT  TTGA       TAT GTTTG    TT AGT TAA   TACAATATC  TATCAAA        CGT                                                                                                                                                                         
     T       CG    AAGTGTA   C     TATT  T   A   ACA         AA       --------   ATTAACGCGAGGTATTGTTTAAAATACAAACGATACCTCGAAAACTAAACATATTAAGCGATGTTTGTAGGTTAAAATATGTTTAACAAGTCAAAACATATTTAAGTAAATATGTAACATTAAACATATTATTCTAGACATAAACATATCAATATTCACATATCCTGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3