SE3820512

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8830
  • Solanum tuberosum
  • SE3820512
  • Mutator
  • M28
  • chr08:33268126-33268820
  • TTATTTTTT
  • GGCTAAAGTATTTATTACCCCCCTGAACTTGAAGCTTTTTATTTGGTGTACACCTAAACTATATTCCTTTTAATTAGCCCCCCGAACTTGTTTATTCCTCCATCACGTACACCTTTTTTGTCCACCTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTTTTT                   C C                                             -         G      -------                     A           T           - TCCTACTG    T      ---  GC    AC   CA        --GAT    ATTTCCACCTGGATAAATAATAGCCACCTAGATAAATTAATATGGCAAAAAATAAATATCAAACATTCATTGTTTAAAAGTTATTTTTGAATAAGGGCTGATTTCACGGAACTCCTTCTGGATTTGGGTTTTTCTAGACGTGCAGTTGGTCGAT
         GGCTAAAGTATTTATTACC C CTGAACTTGAAGCTTTTTATTTGGTGTACACCTAAACTATATTCC TTTTAATTA CCCCCC       GAACTTGTTTATTCCTCCATC CGTACACCTTT TTGTCCACCTG C        TGAC ACACGC   GC  GGCA  TGG  AAAGTGGT     GTGG                                                                                                                                                          
         ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||       ||||||||||||||||||||| ||||||||||| ||||||||||| |        |||| ||||||   ||  ||||  |||  ||||||||     ||||                                                                                                                                                           
         CCGATTTCATAAGTAATGG G GACTTGAACTTCGAAAAATGAGCCACATGTGGATTTGATATAAGG AAAATTAAT GGGGGG       CTTGAACAAATAAGGAGGTAG GCATGTGGAAA AACAGGTGGAC G        ACTG TGTGTG   TG  CCGT  ACT  TTTCACTA     CGGT                                                                                                                                                          
TTTTTTATT                   T A                                             C         G      AGGGGGC                     C           T           C CATCTTTA    T      AGA  AT    GC   -C        AAAAA    GTAGTATTTAGATGTTGCCATTTTTTTTACATTTTAGAGGTAAAAAGAAATTATAAACCGTATAAAATTTGCTTTTTATCCCGTTTTACATTTACTTTTCATTTCCTTTGTTTCTAATTGTGAACCAATCTTAAAGTTTGTTTAAACTTTAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End