Plant MITE

SE3820514

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8832
Solanum tuberosum
SE3820514
Mutator
M8
chr04:217951-218275
TTATAGCAA
GCAAGGCATAATACATAAATGTGCTCTTTAACTTGACCTCATTTCGCATTTATGCCCTTCAACTTTGGATATGCACAAGTAGACATTTAAACTTGTATAAACTCGAACAAGTAGACACAT

Secondary structure and sequence

TSD TIR

5'

3'

TTATA  ---                                 A C   TT C                       ATA                              CTC                -GA   GTACGTGACACAATACACGTAGGACACCACGT
     GC   AAGGCATAATACATAAATGTGCTCTTTAACTTG C TCA  T GCATTTATGCCCTTCAACTTTGG   TGCACAAGTAGACATTTAAACTTGTATAAA   GAACAAGTAGACACAT   GTC                                
     ||   ||||||||||||||||||||||||||||||||| | |||  | |||||||||||||||||||||||   ||||||||||||||||||||||||||||||   ||||||||||||||||   |||                                 
     CG   TTCCGTATTATGTATTTATACGGGAAATTGAAC G AGT  A TGTAAATACGGGAAGTTGAAACC   ACGTGTTCATCTGTGAATTTGAACATATTT   CTTGTTTATCTGTGTG   AGG                                
   AA  ATA                                 C A   TT A                       CAC                              CAA                TAC   ATGTACCTTAGGATGCACAGTAAAAAACAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820514

TTATAGCAAGGCATAATACATAAATGTGCTCTTTAACTTGACCTCATTTCGCATTTATGCCCTTCAACTTTGGATATGCACAAGTAGACATTTAAACTTGTATAAACTCGAACAAGTAGACACATGAGTCGTACGTGACACAATACACGTAGGACACCACGTAGGACAAAAAATGACACGTAGGATTCCATGTAGGACATGTGTGTCTATTTGTTCAACTTTATACAAGTTTAAGTGTCTACTTGTGCACACCCAAAGTTGAAGGGCATAAATGTAATTTGAAGCCAAGTTAAAGGGCATATTTATGTATTATGCCTTATAGCAA

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