SE3810515

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8833
  • Solanum tuberosum
  • SE3810515
  • Tc1/Mariner
  • St22
  • chr01:83468168-83468473
  • TA
  • TACTCCCTCTATCCCATATAATTTTTCCACATTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A  C   ATA    T     -A    AAAAG   -TTG    --AAATTA      G    TTAAA ---     -  --    TTTTATTTTTTTCTCATTTTCCCCTTAAAATTAGTTCTTTTTGAAAGTAATAAGATTGTAAAGTTCCT
TACTCCCTCT TC CAT   ATTT TCCAC  TTCT     TAT    TTCC        CTTGTC ATTA     A   TCAAG AT  ATAA                                                                    
|||||||||| || |||   |||| |||||  ||||     |||    ||||        |||||| ||||     |   ||||| ||  ||||                                                                     
ATGAGGGGGA AG GTA   TGAA AGGTG  AAGA     ATG    GAGG        GTATTT ATTT     T   CATAA AT  TCAA                                                                    
          C  A   CAA    C     AA    --GAA   TCCG    ATTCTTTA      -    ----- CTT     A  GA    ATGCGAAATTGAGAATAATTATGTGAAATAAATACACGGAATAGGTAATTATAGTTCTAATTGTTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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