SE3830516

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8834
  • Solanum tuberosum
  • SE3830516
  • hAT
  • Hat3
  • chr12:25651113-25651311
  • TCTCATAT
  • CAGTGGCGGAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTCATAT   T       C   AAATTT    A    G    AA     -------        AACACA     - AGTGGAAGGGGGTTCGACATCTATTATA
        CAG GGCGGAG CAG      TAAT AGGG GTTC  AATCT       GAGAAGTA      CGAAC T                            
        ||| ||||||| |||      |||| |||| ||||  |||||       ||||||||      ||||| |                            C
        GTC CCGCCTC GTC      ATTA TCCC CAAG  TTGGG       CTTTTTAT      GATAA T                            
TATACTCC   C       C   --GTAT    C    A    -C     GGAGTCG        ---AAT     A ATGTACCAATTTTAATAAAAAATCCATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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