SE3810521

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8839
  • Solanum tuberosum
  • SE3810521
  • Tc1/Mariner
  • St2
  • PGSC0003DMB000000772:67092-67334
  • TA
  • TACTCCCTCTGTCCCAATTTATATGACTTACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                A         CT      CCTTTTTA    G  CCAAAAAGAATGACACATTTCTATTTTAAGTAACAATTTGCCTATAAAATGTCTTTTTTACCCTTAATGAAAT
TACTCCCTCTGTCCCA TTTATATGA  TACTTT        GTCA TC                                                                         
|||||||||||||||| |||||||||  ||||||        |||| ||                                                                         G
ATGAGGGAGGCAGGGT AAATATACT  ATGAAA        GTGT TT                                                                         
                A         AC      -CTAAACC    -  GAAATTCTTTTTACCTTTCTGAAAATTTTGAACACCAGGTTTTACTTACTATCTTTAAACACACCAACATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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