SE3850522

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8840
  • Solanum tuberosum
  • SE3850522
  • PIF/harbinger
  • To6
  • chr08:31049558-31049776
  • TTA
  • AGGGGTCGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              --------------------------T   AAC   TTATCCCAGGATAAGTTATCCTGGAGTTAGCTATCCTGGGATAACTTATCCCACCATGTATATGGGATAACT
  AGGGGTCGTTTGGT                           GGA   AAG                                                                        
  ||||||||||||||                           |||   |||                                                                         
  TCTCCAGCAAACCA                           CTA   TTT                                                                        
AT              CACTCCCTAATTTTTATTATCACTACC   ---   TTTTTTAAATAGAACAAACCAACAGTACAAACCCTATTGAATAGGGTGGTAAATATAGTATCACTACCCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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