Plant MITE

SE3810524

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8842
Solanum tuberosum
SE3810524
Tc1/Mariner
St1
chr01:87872131-87872408
TA
TACTCCCTCTGTCCCTAATTACTTGTCCAC

Secondary structure and sequence

TSD TIR

5'

3'

        C                  C  ATTTCCTTTTTT      C   AA TACTTGTCTATTTTGACAAATCAAGAAAGAACAATTTTTTTTACCTATTATACCCTCAATAAATTACTTTGAAAAGGGTAGAACT
TACTCCCT TGTCCCTAATTACTTGTC AC            AGTTGT CTT  T                                                                                     
|||||||| |||||||||||||||||| ||            |||||| |||  |                                                                                     T
ATGAGGGA ACAGGGATTAATGAACAG TG            GTGTGG TAA  T                                                                                     
        A                  T  -AAAACTTAACT      A   -- TATTTTGTTATTAACTATATCACTCAAATGGTAAAATGGGGATAATTAATACTTCGTCTACTTAATTTTTGAATTCTAAAAGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810524

TACTCCCTCTGTCCCTAATTACTTGTCCACATTTCCTTTTTTAGTTGTCCTTAATTACTTGTCTATTTTGACAAATCAAGAAAGAACAATTTTTTTTACCTATTATACCCTCAATAAATTACTTTGAAAAGGGTAGAACTTCTTGAAAATCTTAAGTTTTTAATTCATCTGCTTCATAATTAATAGGGGTAAAATGGTAAACTCACTATATCAATTATTGTTTTATTAATAGGTGTGTCAATTCAAAAGTTGACAAGTAATTAGGGACAAAGGGAGTA

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