SE3820525

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8843
  • Solanum tuberosum
  • SE3820525
  • Mutator
  • M11
  • chr12:60855167-60855490
  • TAACATATT
  • GGGAAAATGCATAAGTACCCCCTAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAATAATTTTCTACCCCTTTTCGGCCTACGTGACACTATCTTCTGGGCCCAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACATATT                   C          G        C                                                                                C      A       TT     ------CC    GC
         GGGAAAATGCATAAGTACC CCTAACCTAT CCCGAAAT TCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAATAATTTTCTACCCCTTTTCGGC TACGTG CACTATC  CTGGG        CAGC  
         ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |||||        ||||   
         CCCTTTTACGTGTTCATGG GGGTTGGATA GGGCTTTA GGTTTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGACTTGAATAAAATATTTATTAAAAGATGGGGAAAAGCCG ATGCAC GTGATAG  GACTT        GTTG  
TTATACAAT                   A          G        A                                                                                T      C       TT     TTTTAACA    TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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