SE3820526

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8844
  • Solanum tuberosum
  • SE3820526
  • Mutator
  • M6
  • chr04:18403860-18404177
  • TATTTTATA
  • ATAGGGAAAAAGGTCTGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTT                    AATAC  C      T   C      G    T      C A      AT                               A     -A                          A    T   AAA    GCATC
      ATAGGGAAAAAGGTCTGAAA     TC AACTTT GGC GAAATT TTGT ACGATA C AACTTT  GGAGGACCTTTTACCCCCCTACACTATTTAA AGTGT  TTTTAAAGGTATATATGTGCCCATGT GACA CAT   TATT     
      ||||||||||||||||||||     || |||||| ||| |||||| |||| |||||| | ||||||  ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||| |||| |||   ||||     A
      TATCCCTTTTTTCAGACTTT     AG TTGAAA CTG CTTTAA GACA TGTTAT G TTGAAA  TTTCCTGGAAAATGGGGGGATGTGATAAATT TCACA  AAAATTTCCATATATACACGGGTGCA CTGT GTA   ATAA     
ATATTT                    ATTTA  C      -   A      A    T      A C      CC                               A     AA                          C    -   ATG    ATATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End