Plant MITE

SE3830527

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8845
Solanum tuberosum
SE3830527
hAT
Hat56
chr09:9424098-9424383
CCTCTAAT
CAGGGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

CCTCTAAT   G      CCTA   T -----   CAAGTGGGTTTCTATGAACCCACTTCGTTGAAAAATAACACCGTATGTATATGTATATTTTATCAGTTTTTAAAATTTTATATGTATATATTAACTTTTGACCCCACTAACA
        CAG GGCGGA    CAA G     GGT                                                                                                                
        ||| ||||||    ||| |     |||                                                                                                                 
        GTC CCGCCT    GTC T     GTG                                                                                                                
CAATCTCC   A      --AA   - TAAAA   CTTCACCCAAATTCTATATTTTTTATTTTAATTTTACACCGTTATCCTTAAGTTTGAGCCCAACCGACCCTTTGAATTTGGGAGAAATGGTGAGACGGTTCCCAGTGTGAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830527

CCTCTAATCAGGGGCGGACCTACAATGGGTCAAGTGGGTTTCTATGAACCCACTTCGTTGAAAAATAACACCGTATGTATATGTATATTTTATCAGTTTTTAAAATTTTATATGTATATATTAACTTTTGACCCCACTAACACAAGTGTGACCCTTGGCAGAGTGGTAAAGAGGGTTTAAGTTTCCCAGCCAACCCGAGTTTGAATTCCTATTGCCACATTTTAATTTTATTTTTTATATCTTAAACCCACTTCGTGAAAATTCTGAATCCGCCACTGCCTCTAAC

Copy Cancel