SE3820528

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8846
  • Solanum tuberosum
  • SE3820528
  • Mutator
  • M8
  • chr08:3866159-3866471
  • TAAAATTTA
  • TAAAATTTAGGCATAATACATAAATATGTCTTTTAACTTGGCTTCATTTCATATTTATGTCCTTCAACTTTGGGTGTGCACAAGTAGGTACTTAAACTTGTATAAAGTTGAACAAGTAGACAGATGAGTTCTATGTGACATAATACACGTAGGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                                                C                                         G   A              AA    CGT   A  CA
TAAAATTTAGGCATAATACATAAATATGTCTTTTAACTTGGCTTCATTTCATATTTATGTCCTTCAACTTTGGGTGTGCA AAGTAGGTACTTAAACTTGTATAAAGTTGAACAAGTAGACA ATG GTTCTATGTGACAT  TACA   AGG CA  
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  ||||   ||| ||  A
ATTTTAAATCCGTATTATGTATTTATACAGAAAATTGAACCGAAGTAAAGTATAAATACAGGAAGTTGAAACCTACACGT TTCATCTGTGAATTTGAACATATTTCAACTTGTTTATCTGT TGT CAGGATGCACTGTA  ATGT   TCC GT  
                                                                                A                                         G   G              GG    ---   -  TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3