SE3810533

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8851
  • Solanum tuberosum
  • SE3810533
  • Tc1/Mariner
  • St23
  • chr02:38995344-38995621
  • TA
  • TACTCCTCCGTCCCTTTTTACTTGTTAAATTTTGACTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
      -      C  T              ----     C    CACA   ATTAAAAATAAT     T    ATAATGAGTTTACTATTTTATCCCTATTAATTAATAGTCTTAAACATATTTACTCACTTCATTTTTCAAAGA
TACTCC TCCGTC CT TTTACTTGTTAAAT    TTTGA TTGA    CCT            AATGA TGGT                                                                        
|||||| |||||| || ||||||||||||||    ||||| ||||    |||            ||||| ||||                                                                        C
ATGAGG AGGTAG GA AAATGAACAGTTTA    AGATT AACT    GGA            ATGAA CAGT                                                                        
      G      A  C              TAAA     A    AAAG   ---------AAA     -    AAAAACTGTTTCGTTCCTTCCTGTTAAAAAAAGGAAGGATAATATAGGAGTTAAATAATTGTAACTCATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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